xSSAlite


xSSAlite is a Mathematica package that implements Dan Gillespie's Stochastic Simulation Algorithm using Cellerator-arrow notation. The "lite" part of xSSAlite refers to the fact that this version only implements the Cellerator-mass action reactions. Non-mass-action reactions are only implemented in the full version which is currently still in testing.

The original Stochastic Simulation Algorithm was published in the paper "Exact Stochastic Simulation of Coupled Chemical Reactions," The Journal of Physical Chemistry, 81(25):2340-2361 (1977).


xSSA Reference

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SSA
SSADotPlot
SSAFit
SSAGet
SSALinePlot
SSAMean
SSA Palette
SSAPhasePlot
SSAPlot
SSASave
SSAtoXLR8R
XLR8RtoSSA
  

Creative Commons License CC-GNU LGPL

The contents of this web page and its subsidiary web pages are licensed under a Creative Commons Attribution-Noncommercial-Share Alike 3.0 Unported License. Unless otherwise specified, all software posted on this and its subsidiary web pages are released under the CC-GNU LGPL version 2.1 or later.

xCellerator, Cellerator, xlr8r, xSSA, cellzilla, growzilla and arrowzilla are trademarks of the authors and may not be used without permission. Cellerator and Cellerator based technology is protected under United States Patent Number 7,319,945.

[ 2011-03-08T11:46:18-0800 ]